ENSG00000172936


Homo sapiens

Features
Gene ID: ENSG00000172936
  
Biological name :MYD88
  
Synonyms : MYD88 / myeloid differentiation primary response 88 / Q99836
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p22.2
Gene start: 38138478
Gene end: 38143022
  
Corresponding Affymetrix probe sets: 209124_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000390565
Ensembl peptide - ENSP00000389979
Ensembl peptide - ENSP00000391753
Ensembl peptide - ENSP00000417848
Ensembl peptide - ENSP00000401399
Ensembl peptide - ENSP00000379625
NCBI entrez gene - 4615     See in Manteia.
OMIM - 602170
RefSeq - XM_006713170
RefSeq - NM_001172566
RefSeq - NM_001172567
RefSeq - NM_001172568
RefSeq - NM_001172569
RefSeq - NM_002468
RefSeq - XM_005265172
RefSeq Peptide - NP_001166038
RefSeq Peptide - NP_001166037
RefSeq Peptide - NP_001166039
RefSeq Peptide - NP_001166040
RefSeq Peptide - NP_002459
swissprot - A0A0A0MSI9
swissprot - A0A0A0MS70
swissprot - A0A0A0MST0
swissprot - Q99836
swissprot - H0Y4G9
Ensembl - ENSG00000172936
  
Related genetic diseases (OMIM): 153600 - Macroglobulinemia, Waldenstrom, somatic, 153600
  612260 - Pyogenic bacterial infections, recurrent, due to MYD88 deficiency, 612260
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 myd88ENSDARG00000010169Danio rerio
 MYD88ENSGALG00000005947Gallus gallus
 Myd88ENSMUSG00000032508Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000157  Toll/interleukin-1 receptor homology (TIR) domain
 IPR000488  Death domain
 IPR011029  Death-like domain superfamily
 IPR017281  Myeloid differentiation primary response protein MyD88
 IPR034249  MyD88, death domain
 IPR035897  Toll/interleukin-1 receptor homology (TIR) domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002224 toll-like receptor signaling pathway TAS
 biological_processGO:0002238 response to molecule of fungal origin IEA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0002755 MyD88-dependent toll-like receptor signaling pathway IEA
 biological_processGO:0006915 apoptotic process IMP
 biological_processGO:0006954 inflammatory response IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007166 cell surface receptor signaling pathway IEA
 biological_processGO:0007254 JNK cascade IEA
 biological_processGO:0008063 Toll signaling pathway IEA
 biological_processGO:0009615 response to virus IEA
 biological_processGO:0009682 induced systemic resistance IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0016064 immunoglobulin mediated immune response IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway IEA
 biological_processGO:0031663 lipopolysaccharide-mediated signaling pathway IEA
 biological_processGO:0032481 positive regulation of type I interferon production IMP
 biological_processGO:0032494 response to peptidoglycan IEA
 biological_processGO:0032496 response to lipopolysaccharide IEA
 biological_processGO:0032675 regulation of interleukin-6 production IEA
 biological_processGO:0032680 regulation of tumor necrosis factor production IEA
 biological_processGO:0032740 positive regulation of interleukin-17 production IEA
 biological_processGO:0032747 positive regulation of interleukin-23 production IEA
 biological_processGO:0032755 positive regulation of interleukin-6 production IEA
 biological_processGO:0032760 positive regulation of tumor necrosis factor production IEA
 biological_processGO:0034162 toll-like receptor 9 signaling pathway TAS
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0043066 negative regulation of apoptotic process TAS
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEA
 biological_processGO:0044130 negative regulation of growth of symbiont in host IEA
 biological_processGO:0045080 positive regulation of chemokine biosynthetic process IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045351 type I interferon biosynthetic process IEA
 biological_processGO:0046330 positive regulation of JNK cascade IEA
 biological_processGO:0048661 positive regulation of smooth muscle cell proliferation IEA
 biological_processGO:0050671 positive regulation of lymphocyte proliferation IEA
 biological_processGO:0050727 regulation of inflammatory response IEA
 biological_processGO:0050830 defense response to Gram-positive bacterium IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IEA
 biological_processGO:0060337 type I interferon signaling pathway IMP
 biological_processGO:0070498 interleukin-1-mediated signaling pathway TAS
 biological_processGO:0070555 response to interleukin-1 IMP
 biological_processGO:0070935 3"-UTR-mediated mRNA stabilization IDA
 biological_processGO:0071260 cellular response to mechanical stimulus IEP
 biological_processGO:0090557 establishment of endothelial intestinal barrier IEA
 biological_processGO:0140052 cellular response to oxidised low-density lipoprotein particle stimulus IEA
 biological_processGO:1900017 positive regulation of cytokine production involved in inflammatory response IEA
 biological_processGO:1902622 regulation of neutrophil migration IEA
 biological_processGO:2000338 regulation of chemokine (C-X-C motif) ligand 1 production IEA
 biological_processGO:2000341 regulation of chemokine (C-X-C motif) ligand 2 production IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0010008 endosome membrane TAS
 cellular_componentGO:0014069 postsynaptic density IEA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005121 Toll binding IEA
 molecular_functionGO:0005123 death receptor binding TAS
 molecular_functionGO:0005149 interleukin-1 receptor binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0035325 Toll-like receptor binding IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043621 protein self-association IDA
 molecular_functionGO:0070976 TIR domain binding IEA


Pathways (from Reactome)
Pathway description
ER-Phagosome pathway
PIP3 activates AKT signaling
MyD88:Mal cascade initiated on plasma membrane
RIP-mediated NFkB activation via ZBP1
p75NTR recruits signalling complexes
DEx/H-box helicases activate type I IFN and inflammatory cytokines production
MyD88 deficiency (TLR2/4)
MyD88 deficiency (TLR5)
IRAK4 deficiency (TLR5)
IRAK4 deficiency (TLR2/4)
PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling
Interleukin-1 signaling
TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling
TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
MyD88 dependent cascade initiated on endosome
MyD88 cascade initiated on plasma membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000225 Gingival bleeding 
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 HP:0000365 Hearing loss 
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 HP:0000421 Epistaxis 
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 HP:0000520 Proptosis 
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 HP:0000573 Retinal hemorrhage 
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 HP:0000965 Cutis marmorata 
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 HP:0000979 Purpura 
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 HP:0000980 Pallor 
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 HP:0001025 Urticaria 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
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 HP:0001297 Stroke 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001897 Normocytic anemia 
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 HP:0001909 Leukemia "A cancer of the blood and bone marrow characterized by an abnormal proliferation of leukocytes." [HPO:curators]
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 HP:0001945 Fever 
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 HP:0002014 Diarrhea 
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 HP:0002024 Malabsorption 
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 HP:0002039 Anorexia 
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 HP:0002076 Migraine 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002113 Pulmonary infiltrates 
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 HP:0002202 Pleural effusion "The presence of an excessive amount of fluid in the pleural cavity." [HPO:curators]
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0002633 Vasculitis 
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002719 Recurrent infections 
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 HP:0002721 Immunodeficiency 
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 HP:0003347 Impaired lymphocyte transformation with phytohemagglutinin 
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 HP:0003459 Polyclonal elevation of IgM 
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 HP:0003565 Elevated erythrocyte sedimentation rate 
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 HP:0004372 Reduced consciousness/confusion 
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 HP:0005406 Recurrent bacterial skin infections 
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 HP:0005508 Waldenstrom macroglobulinemia 
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 HP:0006824 Cranial nerve paralysis 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010741 Edema of the lower limbs 
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 HP:0010841 Multifocal EEG abnormality "A abnormality in cerebral electrical activity recorded along the scalp by electroencephalography (EEG) and being identified at multiple locations (foci)." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0100539 Periorbital edema 
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 HP:0100724 Hypercoagulability 
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 HP:0100778 Cryoglobulinemia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000196083 IL1RAP / Q9NPH3 / interleukin 1 receptor accessory protein  / reaction / complex
 ENSG00000115602 IL1RL1 / Q01638 / interleukin 1 receptor like 1  / complex
 ENSG00000125538 IL1B / P01584 / interleukin 1 beta  / complex / reaction
 ENSG00000134070 IRAK2 / O43187 / interleukin 1 receptor associated kinase 2  / reaction / complex
 ENSG00000137462 TLR2 / O60603 / toll like receptor 2  / reaction / complex
 ENSG00000115008 IL1A / P01583 / interleukin 1 alpha  / reaction / complex
 ENSG00000174123 TLR10 / Q9BXR5 / toll like receptor 10  / reaction / complex
 ENSG00000170458 CD14 / P08571 / CD14 molecule  / complex / reaction
 ENSG00000135218 CD36 / P16671 / CD36 molecule  / complex / reaction
 ENSG00000174125 TLR1 / Q15399 / toll like receptor 1  / reaction / complex
 ENSG00000154589 LY96 / Q9Y6Y9 / lymphocyte antigen 96  / reaction / complex
 ENSG00000010671 BTK / Q06187 / Bruton tyrosine kinase  / complex / reaction
 ENSG00000244687 Q13404 / UBE2V1 / ubiquitin conjugating enzyme E2 V1  / reaction
 ENSG00000177889 UBE2N / P61088 / ubiquitin conjugating enzyme E2 N  / reaction
 ENSG00000185507 IRF7 / Q92985 / interferon regulatory factor 7  / reaction / complex
 ENSG00000136869 TLR4 / O00206 / toll like receptor 4  / reaction / complex
 ENSG00000175104 TRAF6 / Q9Y4K3 / TNF receptor associated factor 6  / complex / reaction
 ENSG00000184216 IRAK1 / P51617 / interleukin 1 receptor associated kinase 1  / complex / reaction
 ENSG00000187554 TLR5 / O60602 / toll like receptor 5  / complex / reaction
 ENSG00000135829 DHX9 / Q08211 / DExH-box helicase 9  / complex / reaction
 ENSG00000174130 TLR6 / Q9Y2C9 / toll like receptor 6  / reaction / complex
 ENSG00000150455 TIRAP / P58753 / TIR domain containing adaptor protein  / reaction / complex
 ENSG00000137033 IL33 / O95760 / interleukin 33  / complex
 ENSG00000064300 NGFR / P08138 / nerve growth factor receptor  / complex / reaction
 ENSG00000078902 Q9H0E2 / TOLLIP / toll interacting protein  / complex / reaction
 ENSG00000101916 TLR8 / Q9NR97 / toll like receptor 8  / reaction / complex
 ENSG00000239732 TLR9 / Q9NR96 / toll like receptor 9  / complex / reaction
 ENSG00000134259 NGF / P01138 / nerve growth factor  / complex / reaction
 ENSG00000198001 IRAK4 / Q9NWZ3 / interleukin 1 receptor associated kinase 4  / complex / reaction
 ENSG00000174953 DHX36 / Q9H2U1 / DEAH-box helicase 36  / reaction / complex
 ENSG00000172936 MYD88 / Q99836 / myeloid differentiation primary response 88  / complex / reaction
 ENSG00000196664 TLR7 / Q9NYK1 / toll like receptor 7  / complex / reaction
 ENSG00000115594 IL1R1 / P14778 / interleukin 1 receptor type 1  / reaction / complex






 

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