ENSG00000136869


Homo sapiens

Features
Gene ID: ENSG00000136869
  
Biological name :TLR4
  
Synonyms : O00206 / TLR4 / toll like receptor 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q33.1
Gene start: 117704175
Gene end: 117724730
  
Corresponding Affymetrix probe sets: 1552798_a_at (Human Genome U133 Plus 2.0 Array)   221060_s_at (Human Genome U133 Plus 2.0 Array)   224341_x_at (Human Genome U133 Plus 2.0 Array)   232068_s_at (Human Genome U133 Plus 2.0 Array)   240948_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363089
Ensembl peptide - ENSP00000377997
Ensembl peptide - ENSP00000494590
Ensembl peptide - ENSP00000496429
NCBI entrez gene - 7099     See in Manteia.
OMIM - 603030
RefSeq - NM_003266
RefSeq - NM_138554
RefSeq - NM_138557
RefSeq Peptide - NP_003257
RefSeq Peptide - NP_612564
RefSeq Peptide - NP_612567
swissprot - O00206
Ensembl - ENSG00000136869
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tlr4alENSDARG00000075671Danio rerio
 tlr4baENSDARG00000019742Danio rerio
 tlr4bbENSDARG00000022048Danio rerio
 TLR4ENSGALG00000007001Gallus gallus
 Tlr4ENSMUSG00000039005Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TLR8 / Q9NR97 / toll like receptor 8ENSG0000010191624
TLR2 / O60603 / toll like receptor 2ENSG0000013746223
TLR3 / O15455 / toll like receptor 3ENSG0000016434222
AC097637.1ENSG0000017336622
TLR9 / Q9NR96 / toll like receptor 9ENSG0000023973222
TLR7 / Q9NYK1 / toll like receptor 7ENSG0000019666422
TLR1 / Q15399 / toll like receptor 1ENSG0000017412521
TLR5 / O60602 / toll like receptor 5ENSG0000018755420
TLR10 / Q9BXR5 / toll like receptor 10ENSG0000017412320
TLR6 / Q9Y2C9 / toll like receptor 6ENSG0000017413020
CD180 / Q99467 / CD180 moleculeENSG0000013406116


Protein motifs (from Interpro)
Interpro ID Name
 IPR000157  Toll/interleukin-1 receptor homology (TIR) domain
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR027168  Toll-like receptor 4
 IPR032675  Leucine-rich repeat domain superfamily
 IPR035897  Toll/interleukin-1 receptor homology (TIR) domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000187 activation of MAPK activity ISS
 biological_processGO:0002218 activation of innate immune response IMP
 biological_processGO:0002224 toll-like receptor signaling pathway TAS
 biological_processGO:0002322 B cell proliferation involved in immune response IMP
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0002537 nitric oxide production involved in inflammatory response IMP
 biological_processGO:0002730 regulation of dendritic cell cytokine production IDA
 biological_processGO:0002755 MyD88-dependent toll-like receptor signaling pathway TAS
 biological_processGO:0002756 MyD88-independent toll-like receptor signaling pathway TAS
 biological_processGO:0006954 inflammatory response IBA
 biological_processGO:0006955 immune response TAS
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007249 I-kappaB kinase/NF-kappaB signaling TAS
 biological_processGO:0007252 I-kappaB phosphorylation IDA
 biological_processGO:0009617 response to bacterium IMP
 biological_processGO:0010572 positive regulation of platelet activation ISS
 biological_processGO:0010628 positive regulation of gene expression ISS
 biological_processGO:0014002 astrocyte development IMP
 biological_processGO:0016046 detection of fungus NAS
 biological_processGO:0030890 positive regulation of B cell proliferation IMP
 biological_processGO:0031663 lipopolysaccharide-mediated signaling pathway IGI
 biological_processGO:0032496 response to lipopolysaccharide IC
 biological_processGO:0032497 detection of lipopolysaccharide IDA
 biological_processGO:0032609 interferon-gamma production IGI
 biological_processGO:0032689 negative regulation of interferon-gamma production ISS
 biological_processGO:0032700 negative regulation of interleukin-17 production ISS
 biological_processGO:0032707 negative regulation of interleukin-23 production ISS
 biological_processGO:0032715 negative regulation of interleukin-6 production ISS
 biological_processGO:0032720 negative regulation of tumor necrosis factor production ISS
 biological_processGO:0032722 positive regulation of chemokine production IDA
 biological_processGO:0032727 positive regulation of interferon-alpha production ISS
 biological_processGO:0032728 positive regulation of interferon-beta production ISS
 biological_processGO:0032729 positive regulation of interferon-gamma production ISS
 biological_processGO:0032732 positive regulation of interleukin-1 production ISS
 biological_processGO:0032733 positive regulation of interleukin-10 production ISS
 biological_processGO:0032735 positive regulation of interleukin-12 production ISS
 biological_processGO:0032755 positive regulation of interleukin-6 production IDA
 biological_processGO:0032757 positive regulation of interleukin-8 production IDA
 biological_processGO:0032760 positive regulation of tumor necrosis factor production ISS
 biological_processGO:0032874 positive regulation of stress-activated MAPK cascade IDA
 biological_processGO:0034128 negative regulation of MyD88-independent toll-like receptor signaling pathway TAS
 biological_processGO:0034142 toll-like receptor 4 signaling pathway TAS
 biological_processGO:0035666 TRIF-dependent toll-like receptor signaling pathway TAS
 biological_processGO:0042088 T-helper 1 type immune response NAS
 biological_processGO:0042116 macrophage activation IMP
 biological_processGO:0042535 positive regulation of tumor necrosis factor biosynthetic process IDA
 biological_processGO:0042742 defense response to bacterium TAS
 biological_processGO:0043032 positive regulation of macrophage activation ISS
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IDA
 biological_processGO:0045084 positive regulation of interleukin-12 biosynthetic process IDA
 biological_processGO:0045087 innate immune response TAS
 biological_processGO:0045348 positive regulation of MHC class II biosynthetic process IMP
 biological_processGO:0045359 positive regulation of interferon-beta biosynthetic process IMP
 biological_processGO:0045416 positive regulation of interleukin-8 biosynthetic process IDA
 biological_processGO:0045429 positive regulation of nitric oxide biosynthetic process ISS
 biological_processGO:0045671 negative regulation of osteoclast differentiation NAS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 biological_processGO:0046330 positive regulation of JNK cascade IDA
 biological_processGO:0050671 positive regulation of lymphocyte proliferation IMP
 biological_processGO:0050702 interleukin-1 beta secretion ISS
 biological_processGO:0050707 regulation of cytokine secretion IEA
 biological_processGO:0050718 positive regulation of interleukin-1 beta secretion IDA
 biological_processGO:0050727 regulation of inflammatory response IMP
 biological_processGO:0050729 positive regulation of inflammatory response IC
 biological_processGO:0050829 defense response to Gram-negative bacterium IC
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IGI
 biological_processGO:0051770 positive regulation of nitric-oxide synthase biosynthetic process ISS
 biological_processGO:0060729 intestinal epithelial structure maintenance ISS
 biological_processGO:0060907 positive regulation of macrophage cytokine production IMP
 biological_processGO:0070266 necroptotic process TAS
 biological_processGO:0070373 negative regulation of ERK1 and ERK2 cascade ISS
 biological_processGO:0070374 positive regulation of ERK1 and ERK2 cascade IDA
 biological_processGO:0070430 positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway IDA
 biological_processGO:0070434 positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway IDA
 biological_processGO:0071222 cellular response to lipopolysaccharide IDA
 biological_processGO:0071223 cellular response to lipoteichoic acid IMP
 biological_processGO:0071260 cellular response to mechanical stimulus IEP
 biological_processGO:0097190 apoptotic signaling pathway TAS
 biological_processGO:0140052 cellular response to oxidised low-density lipoprotein particle stimulus ISS
 biological_processGO:1900017 positive regulation of cytokine production involved in inflammatory response ISS
 biological_processGO:1900227 positive regulation of NLRP3 inflammasome complex assembly ISS
 biological_processGO:1903223 positive regulation of oxidative stress-induced neuron death ISS
 biological_processGO:1903428 positive regulation of reactive oxygen species biosynthetic process ISS
 biological_processGO:1904646 cellular response to amyloid-beta IGI
 cellular_componentGO:0005622 intracellular IPI
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IDA
 cellular_componentGO:0009897 external side of plasma membrane IDA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0010008 endosome membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031226 intrinsic component of plasma membrane IDA
 cellular_componentGO:0043235 receptor complex IPI
 cellular_componentGO:0046696 lipopolysaccharide receptor complex IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0001530 lipopolysaccharide binding IMP
 molecular_functionGO:0001875 lipopolysaccharide receptor activity IDA
 molecular_functionGO:0004888 transmembrane signaling receptor activity NAS
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity IPI


Pathways (from Reactome)
Pathway description
ER-Phagosome pathway
via Death Receptors in the presence of ligand
Toll Like Receptor 4 (TLR4) Cascade
MyD88:Mal cascade initiated on plasma membrane
MyD88-independent TLR4 cascade
TRIF-mediated programmed cell death
MyD88 deficiency (TLR2/4)
IRAK4 deficiency (TLR2/4)
Regulation of TLR by endogenous ligand
TICAM1,TRAF6-dependent induction of TAK1 complex
Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon
IKK complex recruitment mediated by RIP1
TRAF6-mediated induction of TAK1 complex within TLR4 complex
IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000083 Renal failure 
Show

 HP:0000155 Oral ulcers 
Show

 HP:0000488 Retinopathy 
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
Show

 HP:0000618 Blindness 
Show

 HP:0000737 Irritability 
Show

 HP:0001061 Acne 
Show

 HP:0001097 Keratoconjunctivitis sicca "Dryness of the eye related to deficiency of the tear film components (aqueous, mucin, or lipid), lid surface abnormalities, or epithelial abnormalities. Keratoconjunctivitis sicca often results in a scratchy or sandy sensation (foreign body sensation) in the eyes, and may also be associated with itching, inability to produce tears, photosensitivity, redness, pain, and difficulty in moving the eyelids." [HPO:curators]
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
Show

 HP:0001287 Meningitis 
Show

 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
Show

 HP:0001289 Confusion "Lack of clarity and coherence of thought, perception, understanding, or action." [HPO:curators]
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001369 Arthritis 
Show

 HP:0001482 Subcutaneous nodules 
Show

 HP:0001637 Abnormality of the myocardium 
Show

 HP:0001653 Mitral regurgitation "An `abnormality of the mitral valve` (HP:0001633) characterized by insufficiency or incompetence of the mitral valve resulting in retrograde leaking of blood through the mitral valve upon ventricular contraction." [HPO:probinson]
Show

 HP:0001658 Myocardial infarction 
Show

 HP:0001659 Aortic insufficiency "An insufficiency of the aortic valve, leading to regurgitation (backward flow) of blood from the aorta into the left ventricle." [HPO:curators]
Show

 HP:0001701 Pericarditis 
Show

 HP:0001733 Pancreatitis 
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0001824 Weight loss 
Show

 HP:0001945 Fever 
Show

 HP:0002017 Nausea and vomiting 
Show

 HP:0002024 Malabsorption 
Show

 HP:0002027 Abdominal pain 
Show

 HP:0002039 Anorexia 
Show

 HP:0002076 Migraine 
Show

 HP:0002102 Pleuritis "Inflammation of the pleura." [HPO:sdoelken]
Show

 HP:0002105 Hemoptysis "Coughing up (expectoration) of blood or blood-streaked sputum from the larynx, trachea, bronchi, or lungs." [HPO:curators]
Show

 HP:0002113 Pulmonary infiltrates 
Show

 HP:0002202 Pleural effusion "The presence of an excessive amount of fluid in the pleural cavity." [HPO:curators]
Show

 HP:0002204 Pulmonary embolism 
Show

 HP:0002239 Gastrointestinal hemorrhage 
Show

 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
Show

 HP:0002354 Memory impairment 
Show

 HP:0002376 Developmental regression 
Show

 HP:0002383 Encephalitis 
Show

 HP:0002516 Increased intracranial pressure 
Show

 HP:0002633 Vasculitis 
Show

 HP:0002637 Cerebral ischemia 
Show

 HP:0002716 Lymphadenopathy 
Show

 HP:0002829 Arthralgia 
Show

 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
Show

 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
Show

 HP:0004420 Arterial thrombosis 
Show

 HP:0004936 Venous thrombosis 
Show

 HP:0006824 Cranial nerve paralysis 
Show

 HP:0007256 Mild pyramidal signs 
Show

 HP:0008066 Abnormal blistering of the skin 
Show

 HP:0010885 Aseptic necrosis "A disease where there is cellular death (necrosis) of bone components due to interruption of the blood supply." [HPO:sdoelken]
Show

 HP:0011107 Recurrent aphthous stomatitis "Recurrent episodes of ulceration of the oral mucosa." [HPO:probinson]
Show

 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
Show

 HP:0100326 Immunologic hypersensitivity 
Show

 HP:0100584 Endocarditis "An inflammation of the endocardium, the inner layer of the heart, which usually involves the heart valves." [HPO:sdoelken]
Show

 HP:0100614 Myositis "A general term for inflammation of the muscles without respect to the underlying cause." [HPO:sdoelken]
Show

 HP:0100654 Retrobulbar optic neuritis "`Optic neuritis`(HP:0100653) that occurs in the section of the optic nerve located behind the eyebal." [HPO:sdoelken]
Show

 HP:0100758 Gangrene "A serious and potentially life-threatening condition that arises when a considerable mass of body tissue dies (necrosis)." [ISBN:9780781770873]
Show

 HP:0100796 Orchitis "Testicular inflammation." [HPO:sdoelken]
Show

 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
Show

 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000129465 RIPK3 / Q9Y572 / receptor interacting serine/threonine kinase 3  / complex / reaction
 ENSG00000100324 TAB1 / Q15750 / TGF-beta activated kinase 1 (MAP3K7) binding protein 1  / complex / reaction
 ENSG00000127666 Q8IUC6 / TICAM1 / toll like receptor adaptor molecule 1  / complex / reaction
 ENSG00000136560 TANK / Q92844 / TRAF family member associated NFKB activator  / complex / reaction
 ENSG00000134070 IRAK2 / O43187 / interleukin 1 receptor associated kinase 2  / complex / reaction
 ENSG00000157625 TAB3 / Q8N5C8 / TGF-beta activated kinase 1 and MAP3K7 binding protein 3  / complex / reaction
 ENSG00000160678 P23297 / S100A1 / S100 calcium binding protein A1  / reaction / complex
 ENSG00000170458 CD14 / P08571 / CD14 molecule  / complex / reaction
 ENSG00000171560 FGA / P02671 / fibrinogen alpha chain  / reaction / complex
 ENSG00000171564 FGB / P02675 / fibrinogen beta chain  / complex / reaction
 ENSG00000154589 LY96 / Q9Y6Y9 / lymphocyte antigen 96  / reaction / complex
 ENSG00000010671 BTK / Q06187 / Bruton tyrosine kinase  / reaction / complex
 ENSG00000183735 TBK1 / Q9UHD2 / TANK binding kinase 1  / reaction / complex
 ENSG00000189403 HMGB1 / P09429 / high mobility group box 1  / complex / reaction
 ENSG00000171557 FGG / P02679 / fibrinogen gamma chain  / complex / reaction
 ENSG00000198001 IRAK4 / Q9NWZ3 / interleukin 1 receptor associated kinase 4  / complex / reaction
 ENSG00000133661 SFTPD / P35247 / surfactant protein D  / reaction / complex
 ENSG00000104365 IKBKB / O14920 / inhibitor of nuclear factor kappa B kinase subunit beta  / complex / reaction
 ENSG00000055208 TAB2 / Q9NYJ8 / TGF-beta activated kinase 1/MAP3K7 binding protein 2  / reaction / complex
 ENSG00000184216 IRAK1 / P51617 / interleukin 1 receptor associated kinase 1  / complex / reaction
 ENSG00000175104 TRAF6 / Q9Y4K3 / TNF receptor associated factor 6  / complex / reaction
 ENSG00000122852 Q8IWL2 / SFTPA1 / surfactant protein A1  / complex / reaction
 ENSG00000126456 IRF3 / Q14653 / interferon regulatory factor 3  / reaction / complex
 ENSG00000135341 MAP3K7 / O43318 / mitogen-activated protein kinase kinase kinase 7  / reaction / complex
 ENSG00000269335 IKBKG / Q9Y6K9 / inhibitor of nuclear factor kappa B kinase subunit gamma  / complex / reaction
 ENSG00000185303 Q8IWL1 / SFTPA2 / surfactant protein A2  / reaction / complex
 ENSG00000135218 CD36 / P16671 / CD36 molecule  / reaction / complex
 ENSG00000150455 TIRAP / P58753 / TIR domain containing adaptor protein  / reaction / complex
 ENSG00000064012 CASP8 / Q14790 / caspase 8  / reaction / complex
 ENSG00000213341 CHUK / O15111 / conserved helix-loop-helix ubiquitous kinase  / complex / reaction
 ENSG00000004139 SARM1 / Q6SZW1 / sterile alpha and TIR motif containing 1  / complex / reaction
 ENSG00000168040 FADD / Q13158 / Fas associated via death domain  / complex / reaction
 ENSG00000136869 TLR4 / O00206 / toll like receptor 4  / reaction / complex
 ENSG00000137275 RIPK1 / Q13546 / receptor interacting serine/threonine kinase 1  / complex / reaction
 ENSG00000185507 IRF7 / Q92985 / interferon regulatory factor 7  / complex / reaction
 ENSG00000172936 MYD88 / Q99836 / myeloid differentiation primary response 88  / complex / reaction
 ENSG00000131323 TRAF3 / Q13114 / TNF receptor associated factor 3  / complex / reaction
 ENSG00000143546 P05109 / S100A8 / S100 calcium binding protein A8  / reaction / complex
 ENSG00000163220 P06702 / S100A9 / S100 calcium binding protein A9  / complex / reaction
 ENSG00000174130 TLR6 / Q9Y2C9 / toll like receptor 6  / complex
 ENSG00000243414 Q86XR7 / TICAM2 / toll like receptor adaptor molecule 2  / complex / reaction
 ENSG00000263528 IKBKE / Q14164 / inhibitor of nuclear factor kappa B kinase subunit epsilon  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr